PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016836
Common NameLOC102579016
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 257aa    MW: 28068.1 Da    PI: 10.3222
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016836genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.91.3e-10236256222
                           --SS-EEEEEEE--TT-SS-E CS
                  WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                            D+y+WrKYGqK++kgs++pr
  PGSC0003DMP400016836 236 ADEYSWRKYGQKPIKGSPYPR 256
                           69******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.4E-16188233IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.9E-10223256IPR003657WRKY domain
PROSITE profilePS5081112.978230256IPR003657WRKY domain
SuperFamilySSF1182907.72E-8231256IPR003657WRKY domain
PfamPF031062.1E-6237256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAVDLLNYSN INEQLAIQEA ASAGLKSMDN LIRFVSFQQQ QNQTVQPDCR EITDYTVNNF  60
RKVISILNRT GHARFRRSPV QVTDDSCTAL TLSPLTTPAE EILPAVKAPV IVPVEKYQSK  120
ALTLDFTKRK VGKSMGCEAV PVASSTTSSS FMSTITGEGS VSNGKVFSSM NLPPRPPVSS  180
GKPPIAGKRC RDHDLSDEFS GRTSSSGKCH CKKRKSRVKK VIRVPAISSK TADIPADEYS  240
WRKYGQKPIK GSPYPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0569150.0EU056915.1 Solanum tuberosum WRKY transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357046.10.0PREDICTED: probable WRKY transcription factor 11
SwissprotQ9SV152e-80WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLM1AKF50.0M1AKF5_SOLTU; Uncharacterized protein
TrEMBLM1AKF70.0M1AKF7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000246320.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.22e-59WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]